Software

General purpose utility related to GAF files

Pangenome-scale interactive graph visualization

Generation and alignment of panproteome graphs

Analysis of the set of founder sequences under a homologous recombination model.

A tool for computing statistics for GFA-formatted pangenome graphs

Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

Minimizer based sparse de Bruijn Graph constructor

A general-purpose tool for detecting Bubbles and Superbubbles in genome graphs.

A short-read genotyper for various types of genetic variants (such as SNPs, indels and structural variants) represented in a pangenome graph.

A tool to align long reads to genome graphs.

A tool for read-based phasing.

Retired