PanPA
Generation and alignment of panproteome graphs
hrfs
Analysis of the set of founder sequences under a homologous recombination model.
pangenome-growth
Calculate growth statistics for pangenome graphs.
ASHLEYS
Automated Selection of High quality Libraries for the Extensive analYsis of Strandseq data
GFAffix
MBG
Minimizer based sparse de Bruijn Graph constructor
BubbleGun
A general-purpose tool for detecting Bubbles and Superbubbles in genome graphs.
PanGenie
A short-read genotyper for various types of genetic variants (such as SNPs, indels and structural variants) represented in a pangenome graph.
GraphAligner
A tool to align long reads to genome graphs.
WhatsHap
A tool for read-based phasing.
Retired