The Marschall Lab
Our research group, headed by Prof. Dr. Tobias Marschall, mainly works on genome data science, with a focus on novel algorithms and software tools for computational genomics. We address computational challenges arising from latest sequencing technologies to further our understanding of genomic variation and their consequences on phenotypic variation and disease. Over the past years, a special emphasis has been on methods for haplotype reconstruction, genome assembly, structural variation analysis, pangenomics and single-cell genomics.
Publications
Legend: * joint first author; † joint last author
Software
PanGenie
A short-read genotyper for various types of genetic variants (such as SNPs, indels and structural variants) represented in a pangenome graph.
GraphAligner
A tool to align long reads to genome graphs.
MBG
Minimizer based sparse de Bruijn Graph constructor
BubbleGun
A general-purpose tool for detecting Bubbles and Superbubbles in genome graphs.
PanPA
Generation and alignment of panproteome graphs
WhatsHap
A tool for read-based phasing.