Arda Söylev, Ph.D.

PostDoc

arda.soylev

hhu.de

Arda Söylev completed his PhD in computer science at Bilkent University in 2018, where he developed algorithms on structural variation discovery with Dr. Can Alkan in Bioinformatics and Computational Genomics Group. Prior to joining Marschall Lab in August 2022, he worked on genotyping structural variations using ancient DNA with Dr. Mehmet Somel at Middle East Technical University. He also worked on pangenome graphs with microbiome at the University of Chicago in Meren Lab.

Software

gaftools

General purpose utility related to GAF files

Publications

Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project

bioRxiv, April 20, 2024

Schloissnig S, Pani S, Rodriguez-Martin B, Ebler J, Hain C, Tsapalou V, Söylev A, Hüther P, Ashraf H, Prodanov T, Asparuhova M, Hunt S, Rausch T, Marschall T, Korbel J

SVarp: pangenome-based structural variant discovery

bioRxiv, February 18, 2024

Full text

Söylev A, Ebler J, Pani S, Rausch T, O. Korbel J, Marschall T

Legend: * joint first author; † joint last author