Mghareghani

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science, February 25, 2021

Ebert P*, Audano PA*, Zhu Q*, Rodriguez-Martin B*, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, Lin J, Rausch T, Chen Y, Ren J, Santamarina M, Höps W, Ashraf H, Chuang NT, Yang X, Munson KM, Lewis AP, Fairley S, Tallon LJ, Clarke WE, Basile AO, Byrska-Bishop M, Corvelo A, Evani US, Lu TY, Chaisson MJP, Chen J, Li C, Brand H, Wenger AM, Ghareghani M, Harvey WT, Raeder B, Hasenfeld P, Regier AA, Abel HJ, Hall IM, Flicek P, Stegle O, Gerstein MB, Tubio JMC, Mu Z, Li YI, Shi X, Hastie AR, Ye K, Chong Z, Sanders AD, Zody MC, Talkowski ME, Mills RE, Devine SE, Lee C†, Korbel JO†, Marschall T†, Eichler EE†

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nat Biotechnol, December 7, 2020

Porubsky D*, Ebert P*, Audano PA, Vollger MR, Harvey WT, Marijon P, Ebler J, Munson KM, Sorensen M, Sulovari A, Haukness M, Ghareghani M, Lansdorp PM, Paten B, Devine SE, Sanders AD, Lee C, Chaisson MJP, Korbel JO, Eichler EE†, Marschall T†

Single-cell analysis of structural variations and complex rearrangements with tri-channel processing

Nat Biotechnol, December 23, 2019

Sanders AD*, Meiers S*, Ghareghani M*, Porubsky D*, Jeong H, van Vliet MACC, Rausch T, Richter-Pechanska P, Kunz JB, Jenni S, Bolognini D, Longo GMC, Raeder B, Kinanen V, Zimmermann J, Benes V, Schrappe M, Mardin BR, Kulozik AE, Bornhauser B, Bourquin J, Marschall T, Korbel JO

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization

Bioinformatics, June 27, 2018

Ghareghani M, Porubsky D, Sanders DA, Meiers S, Eichler EE, Korbel JO, Marschall T

Maryam Ghareghani

(alum)