Maryam Ghareghani

(alum)

Publications
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
Science, February 25, 2021
Ebert P*, Audano PA*, Zhu Q*, Rodriguez-Martin B*, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, Lin J, Rausch T, Chen Y, Ren J, Santamarina M, Höps W, Ashraf H, Chuang NT, Yang X, Munson KM, Lewis AP, Fairley S, Tallon LJ, Clarke WE, Basile AO, Byrska-Bishop M, Corvelo A, Evani US, Lu TY, Chaisson MJP, Chen J, Li C, Brand H, Wenger AM, Ghareghani M, Harvey WT, Raeder B, Hasenfeld P, Regier AA, Abel HJ, Hall IM, Flicek P, Stegle O, Gerstein MB, Tubio JMC, Mu Z, Li YI, Shi X, Hastie AR, Ye K, Chong Z, Sanders AD, Zody MC, Talkowski ME, Mills RE, Devine SE, Lee C, Korbel JO, Marschall T, Eichler EE
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
Nat Biotechnol, December 7, 2020
Porubsky D*, Ebert P*, Audano PA, Vollger MR, Harvey WT, Marijon P, Ebler J, Munson KM, Sorensen M, Sulovari A, Haukness M, Ghareghani M, Lansdorp PM, Paten B, Devine SE, Sanders AD, Lee C, Chaisson MJP, Korbel JO, Eichler EE, Marschall T
Single-cell analysis of structural variations and complex rearrangements with tri-channel processing
Nat Biotechnol, December 23, 2019
Sanders AD*, Meiers S*, Ghareghani M*, Porubsky D*, Jeong H, van Vliet MACC, Rausch T, Richter-Pechanska P, Kunz JB, Jenni S, Bolognini D, Longo GMC, Raeder B, Kinanen V, Zimmermann J, Benes V, Schrappe M, Mardin BR, Kulozik AE, Bornhauser B, Bourquin J, Marschall T, Korbel JO
Strand-seq enables reliable separation of long reads by chromosome via expectation maximization
Bioinformatics, June 27, 2018
Ghareghani M, Porubsky D, Sanders DA, Meiers S, Eichler EE, Korbel JO, Marschall T

Legend: * joint first author; joint last author