Samarendra Pani

PhD Student

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Samarendra.Pani

hhu.de

Samarendra received his BS-MS degree from IISER Pune, India in 2022. He joined Prof. Dr. Marschall's group as a PhD student at Universitätsklinikum Düsseldorf after finishing his MS thesis under him. His research interests include algorithm and pipeline development for inferring genome information like genotype using long reads and a pangenome reference.

Software

gaftools

General purpose utility related to GAF files

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Publications

Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project

bioRxiv, April 20, 2024

PubMed
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Schloissnig S, Pani S, Rodriguez-Martin B, Ebler J, Hain C, Tsapalou V, Söylev A, Hüther P, Ashraf H, Prodanov T, Asparuhova M, Hunt S, Rausch T, Marschall T, Korbel J

SVarp: pangenome-based structural variant discovery

bioRxiv, February 18, 2024

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Söylev A, Ebler J, Pani S, Rausch T, O. Korbel J, Marschall T

Legend: * joint first author; † joint last author